Variant report

Variant	rs17120052
Chromosome Location	chr14:84959600-84959601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17120012	0.89[AFR][1000 genomes]
rs34211828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61378500	1.00[AMR][1000 genomes]
rs73375642	0.92[AFR][1000 genomes]
rs73375662	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73379389	1.00[AMR][1000 genomes]
rs73379394	1.00[AMR][1000 genomes]
rs73379399	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84950600-84965000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr14:84951000-84959800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:84959000-84959800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:84959200-84960600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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