Variant report

Variant	rs73375642
Chromosome Location	chr14:84972687-84972688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11846527	0.86[EUR][1000 genomes]
rs17120012	0.82[AFR][1000 genomes]
rs17120052	0.92[AFR][1000 genomes]
rs34211828	0.92[AFR][1000 genomes]
rs61378500	0.85[AFR][1000 genomes]
rs73372745	1.00[EUR][1000 genomes]
rs73375662	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84972200-84973200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr14:84972400-84972800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:84972600-84972800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr14:84972600-84973200	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links