Variant report

Variant	rs11846527
Chromosome Location	chr14:84912374-84912375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10151029	1.00[ASN][1000 genomes]
rs1375450	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17094379	0.87[ASN][1000 genomes]
rs17120010	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2998296	1.00[CEU][hapmap]
rs60436002	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs66541561	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67378160	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67803520	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs68173195	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72706914	0.87[ASN][1000 genomes]
rs72706915	0.87[ASN][1000 genomes]
rs72707153	1.00[ASN][1000 genomes]
rs73372745	0.86[EUR][1000 genomes]
rs73372762	0.87[ASN][1000 genomes]
rs73372780	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73373896	0.87[ASN][1000 genomes]
rs73375642	0.86[EUR][1000 genomes]
rs8016103	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84904000-84912600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:84909200-84912600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:84909600-84912600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:84911000-84913200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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