Variant report

Variant	rs72707153
Chromosome Location	chr14:84840607-84840608
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10151029	1.00[ASN][1000 genomes]
rs11846527	1.00[ASN][1000 genomes]
rs1375450	0.87[ASN][1000 genomes]
rs17094379	0.87[ASN][1000 genomes]
rs17120010	0.87[ASN][1000 genomes]
rs60436002	0.87[ASN][1000 genomes]
rs66541561	0.87[ASN][1000 genomes]
rs67378160	0.87[ASN][1000 genomes]
rs67803520	0.87[ASN][1000 genomes]
rs68173195	0.87[ASN][1000 genomes]
rs72689550	1.00[EUR][1000 genomes]
rs72705236	1.00[AFR][1000 genomes]
rs72706914	0.87[ASN][1000 genomes]
rs72706915	0.87[ASN][1000 genomes]
rs73372762	0.87[ASN][1000 genomes]
rs73372780	0.87[ASN][1000 genomes]
rs73373896	0.87[ASN][1000 genomes]
rs8016103	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832845	chr14:84726378-84900199	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84838800-84841200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:84839000-84843600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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