Variant report

Variant	rs17120160
Chromosome Location	chr14:85037974-85037975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17120162	1.00[ASN][1000 genomes]
rs17120164	1.00[ASN][1000 genomes]
rs17201203	1.00[ASN][1000 genomes]
rs17796137	1.00[ASN][1000 genomes]
rs1839238	1.00[ASN][1000 genomes]
rs66616861	1.00[ASN][1000 genomes]
rs66879618	1.00[ASN][1000 genomes]
rs67337403	1.00[ASN][1000 genomes]
rs67928577	1.00[ASN][1000 genomes]
rs72692318	1.00[ASN][1000 genomes]
rs921255	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046875	chr14:84993510-85193250	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1052415	chr14:85001891-85078853	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85036600-85046200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr14:85037000-85045000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:85037800-85038600	Enhancers	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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