Variant report

Variant	rs17201203
Chromosome Location	chr14:85014552-85014553
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12433289	0.95[AFR][1000 genomes]
rs17120160	1.00[ASN][1000 genomes]
rs17120162	1.00[ASN][1000 genomes]
rs17120164	1.00[ASN][1000 genomes]
rs17796137	1.00[ASN][1000 genomes]
rs1839238	1.00[ASN][1000 genomes]
rs66616861	1.00[ASN][1000 genomes]
rs66879618	1.00[ASN][1000 genomes]
rs67337403	1.00[ASN][1000 genomes]
rs67928577	1.00[ASN][1000 genomes]
rs72692318	1.00[ASN][1000 genomes]
rs8021755	0.92[AFR][1000 genomes]
rs8023122	0.92[AFR][1000 genomes]
rs921255	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046875	chr14:84993510-85193250	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1052415	chr14:85001891-85078853	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17201203	APOBEC2	trans	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85012200-85015800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:85012400-85017600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:85014200-85014600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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