Variant report

Variant	rs8023122
Chromosome Location	chr14:85005663-85005664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10047881	0.91[ASN][1000 genomes]
rs10129959	0.90[ASN][1000 genomes]
rs10135257	0.88[ASN][1000 genomes]
rs10139140	0.88[ASN][1000 genomes]
rs10139910	0.91[ASN][1000 genomes]
rs10143425	0.89[ASN][1000 genomes]
rs10143465	0.89[ASN][1000 genomes]
rs10143520	0.89[ASN][1000 genomes]
rs10143560	0.89[ASN][1000 genomes]
rs10149901	0.90[ASN][1000 genomes]
rs10150983	0.87[ASN][1000 genomes]
rs11159653	0.86[ASN][1000 genomes]
rs11159656	0.93[ASN][1000 genomes]
rs11159657	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11626109	0.89[ASN][1000 genomes]
rs11851626	0.86[ASN][1000 genomes]
rs12432153	0.91[ASN][1000 genomes]
rs12432805	0.88[ASN][1000 genomes]
rs12433289	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12436058	0.93[ASN][1000 genomes]
rs12883674	0.82[ASN][1000 genomes]
rs12885198	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12893421	0.88[ASN][1000 genomes]
rs12894449	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12894498	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1349175	0.88[ASN][1000 genomes]
rs1349176	0.88[ASN][1000 genomes]
rs1449094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1449121	0.91[ASN][1000 genomes]
rs1579961	0.88[ASN][1000 genomes]
rs17201203	0.92[AFR][1000 genomes]
rs1947214	0.93[ASN][1000 genomes]
rs1947215	0.93[ASN][1000 genomes]
rs2922629	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2922639	0.91[ASN][1000 genomes]
rs2922640	0.91[ASN][1000 genomes]
rs2998298	0.91[ASN][1000 genomes]
rs3008524	0.91[ASN][1000 genomes]
rs34280591	0.88[ASN][1000 genomes]
rs4904185	0.88[ASN][1000 genomes]
rs57500635	0.82[ASN][1000 genomes]
rs7144544	0.87[ASN][1000 genomes]
rs7492709	0.82[ASN][1000 genomes]
rs8007784	0.82[ASN][1000 genomes]
rs8008030	0.88[ASN][1000 genomes]
rs8014008	0.93[ASN][1000 genomes]
rs8016030	0.91[ASN][1000 genomes]
rs8021755	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323747	0.84[ASN][1000 genomes]
rs997625	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046875	chr14:84993510-85193250	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1052415	chr14:85001891-85078853	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8023122	CDC37	trans	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85001200-85010800	Weak transcription	Ovary	ovary
2	chr14:85003000-85006800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:85003000-85007000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr14:85003000-85007400	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links