Variant report

Variant	rs10150983
Chromosome Location	chr14:84959354-84959355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10047881	0.96[ASN][1000 genomes]
rs10129959	0.97[ASN][1000 genomes]
rs10135257	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10139140	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10139910	0.93[ASN][1000 genomes]
rs10143425	0.98[ASN][1000 genomes]
rs10143465	0.98[ASN][1000 genomes]
rs10143520	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10143560	0.98[ASN][1000 genomes]
rs10149901	0.97[ASN][1000 genomes]
rs11159653	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11159656	0.94[ASN][1000 genomes]
rs11159657	0.88[ASN][1000 genomes]
rs11626109	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11851626	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12432153	0.96[ASN][1000 genomes]
rs12432805	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12433289	0.86[ASN][1000 genomes]
rs12436058	0.94[ASN][1000 genomes]
rs12883674	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12885198	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12893421	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12894449	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12894498	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1349175	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1349176	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1449094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1579961	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1947214	0.94[ASN][1000 genomes]
rs1947215	0.91[ASN][1000 genomes]
rs2922629	0.89[ASN][1000 genomes]
rs2922639	0.96[ASN][1000 genomes]
rs2922640	0.96[ASN][1000 genomes]
rs2998298	0.96[ASN][1000 genomes]
rs3008524	0.96[ASN][1000 genomes]
rs34280591	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4904185	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57500635	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7144544	0.95[ASN][1000 genomes]
rs7492709	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8007784	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8008030	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8014008	0.94[ASN][1000 genomes]
rs8016030	0.95[ASN][1000 genomes]
rs8021755	0.87[ASN][1000 genomes]
rs8023122	0.87[ASN][1000 genomes]
rs997625	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84950600-84965000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr14:84951000-84959800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:84958800-84959400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr14:84959000-84959800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:84959200-84959400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:84959200-84960600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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