Variant report

Variant	rs12894498
Chromosome Location	chr14:84973459-84973460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:84972764..84974846-chr7:129843763..129846483,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146842	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10047881	0.97[ASN][1000 genomes]
rs10129959	1.00[ASN][1000 genomes]
rs10135257	0.98[ASN][1000 genomes]
rs10139140	0.98[ASN][1000 genomes]
rs10139910	0.94[ASN][1000 genomes]
rs10143425	0.99[ASN][1000 genomes]
rs10143465	0.99[ASN][1000 genomes]
rs10143520	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10143560	0.99[ASN][1000 genomes]
rs10149901	1.00[ASN][1000 genomes]
rs10150983	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11159653	0.96[ASN][1000 genomes]
rs11159656	0.96[ASN][1000 genomes]
rs11159657	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11626109	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11851626	0.96[ASN][1000 genomes]
rs12432153	0.97[ASN][1000 genomes]
rs12432805	0.98[ASN][1000 genomes]
rs12433289	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12436058	0.96[ASN][1000 genomes]
rs12883674	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12885198	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12893421	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12894449	0.99[ASN][1000 genomes]
rs1349175	0.98[ASN][1000 genomes]
rs1349176	0.98[ASN][1000 genomes]
rs1449094	0.87[ASN][1000 genomes]
rs1449121	0.81[ASN][1000 genomes]
rs1579961	0.98[ASN][1000 genomes]
rs1947214	0.96[ASN][1000 genomes]
rs1947215	0.93[ASN][1000 genomes]
rs2922629	0.90[ASN][1000 genomes]
rs2922639	0.97[ASN][1000 genomes]
rs2922640	0.97[ASN][1000 genomes]
rs2998298	0.97[ASN][1000 genomes]
rs3008524	0.97[ASN][1000 genomes]
rs34280591	0.98[ASN][1000 genomes]
rs4904185	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57500635	0.91[ASN][1000 genomes]
rs7144544	0.96[ASN][1000 genomes]
rs7492709	0.91[ASN][1000 genomes]
rs8007784	0.91[ASN][1000 genomes]
rs8008030	0.98[ASN][1000 genomes]
rs8014008	0.96[ASN][1000 genomes]
rs8016030	0.96[ASN][1000 genomes]
rs8021755	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8023122	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs997625	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84972800-84973600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr14:84973200-84973800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:84973200-84983800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links