Variant report

Variant	rs12883674
Chromosome Location	chr14:84950085-84950086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:84941421..84943706-chr14:84949512..84951375,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10047881	0.90[ASN][1000 genomes]
rs10129959	0.91[ASN][1000 genomes]
rs10135257	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10139140	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10139910	0.87[ASN][1000 genomes]
rs10143425	0.92[ASN][1000 genomes]
rs10143465	0.92[ASN][1000 genomes]
rs10143520	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10143560	0.92[ASN][1000 genomes]
rs10149901	0.91[ASN][1000 genomes]
rs10150983	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11159653	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11159656	0.89[ASN][1000 genomes]
rs11159657	0.83[ASN][1000 genomes]
rs11626109	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11851626	0.92[ASN][1000 genomes]
rs12432153	0.90[ASN][1000 genomes]
rs12432805	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12433289	0.81[ASN][1000 genomes]
rs12436058	0.89[ASN][1000 genomes]
rs12885198	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12893421	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12894449	0.82[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12894498	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1349175	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1349176	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1449094	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs1449121	0.85[ASN][1000 genomes]
rs1579961	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1947214	0.89[ASN][1000 genomes]
rs1947215	0.86[ASN][1000 genomes]
rs2922629	0.83[ASN][1000 genomes]
rs2922639	0.90[ASN][1000 genomes]
rs2922640	0.90[ASN][1000 genomes]
rs2998298	0.90[ASN][1000 genomes]
rs3008524	0.90[ASN][1000 genomes]
rs34280591	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4904185	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57500635	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7144544	0.89[ASN][1000 genomes]
rs7492709	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8007784	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8008030	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8014008	0.89[ASN][1000 genomes]
rs8016030	0.89[ASN][1000 genomes]
rs8021755	0.82[ASN][1000 genomes]
rs8023122	0.82[ASN][1000 genomes]
rs997625	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84947800-84951600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr14:84948200-84950200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:84948400-84950600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:84948400-84950600	Enhancers	NH-A	brain
5	chr14:84948400-84951600	Enhancers	NHEK	skin
6	chr14:84948600-84950400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr14:84949000-84950200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr14:84949000-84951200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:84949000-84951400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:84949200-84950600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr14:84949800-84950200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:84949800-84950400	Enhancers	Brain Germinal Matrix	brain
13	chr14:84949800-84950800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:84949800-84950800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:84949800-84950800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr14:84949800-84951800	Enhancers	Hela-S3	cervix
17	chr14:84949800-84951800	Enhancers	HUVEC	blood vessel
18	chr14:84950000-84950400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr14:84950000-84950600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr14:84950000-84951400	Weak transcription	HSMM	muscle

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