Variant report

Variant	rs10143425
Chromosome Location	chr14:84971207-84971208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10047881	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10129959	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10135257	0.99[ASN][1000 genomes]
rs10139140	0.99[ASN][1000 genomes]
rs10139910	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10143465	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10143520	1.00[ASN][1000 genomes]
rs10143560	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149901	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10150983	0.98[ASN][1000 genomes]
rs11159653	0.97[ASN][1000 genomes]
rs11159656	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11159657	0.90[ASN][1000 genomes]
rs11626109	1.00[ASN][1000 genomes]
rs11851626	0.96[ASN][1000 genomes]
rs12432153	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12432805	0.99[ASN][1000 genomes]
rs12433289	0.88[ASN][1000 genomes]
rs12436058	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12883674	0.92[ASN][1000 genomes]
rs12885198	0.99[ASN][1000 genomes]
rs12893421	0.99[ASN][1000 genomes]
rs12894449	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12894498	0.99[ASN][1000 genomes]
rs1349175	0.99[ASN][1000 genomes]
rs1349176	0.99[ASN][1000 genomes]
rs1449094	0.86[ASN][1000 genomes]
rs1449121	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1579961	0.99[ASN][1000 genomes]
rs1947214	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1947215	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2922629	0.91[ASN][1000 genomes]
rs2922639	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2922640	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2998298	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3008524	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34280591	0.99[ASN][1000 genomes]
rs4904185	0.99[ASN][1000 genomes]
rs57500635	0.92[ASN][1000 genomes]
rs7144544	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7492709	0.92[ASN][1000 genomes]
rs8007784	0.92[ASN][1000 genomes]
rs8008030	0.99[ASN][1000 genomes]
rs8014008	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8016030	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8021755	0.89[ASN][1000 genomes]
rs8023122	0.89[ASN][1000 genomes]
rs997625	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84968000-84972200	Active TSS	iPS-18 Cell Line	embryonic stem cell
2	chr14:84968200-84972400	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr14:84968800-84972600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr14:84970200-84972000	Active TSS	H9 Cell Line	embryonic stem cell
5	chr14:84971000-84972000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links