Variant report

Variant	rs1449121
Chromosome Location	chr14:85011825-85011826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:85009477..85011974-chr14:85012682..85014738,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10047881	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10129959	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10139910	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10143425	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10143465	0.81[ASN][1000 genomes]
rs10143520	0.81[ASN][1000 genomes]
rs10143560	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10149901	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11159656	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11159657	0.89[ASN][1000 genomes]
rs11626109	0.81[ASN][1000 genomes]
rs12432153	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12433289	0.92[ASN][1000 genomes]
rs12436058	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12883674	0.85[ASN][1000 genomes]
rs12885198	0.81[ASN][1000 genomes]
rs12894449	0.92[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12894498	0.81[ASN][1000 genomes]
rs1449094	0.85[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1947214	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1947215	0.84[ASN][1000 genomes]
rs2922629	0.85[ASN][1000 genomes]
rs2922639	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2922640	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2998298	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3008524	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57500635	0.85[ASN][1000 genomes]
rs7492709	0.85[ASN][1000 genomes]
rs8007784	0.85[ASN][1000 genomes]
rs8014008	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8016030	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8021755	0.91[ASN][1000 genomes]
rs8023122	0.91[ASN][1000 genomes]
rs9323747	0.81[ASN][1000 genomes]
rs997625	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046875	chr14:84993510-85193250	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1052415	chr14:85001891-85078853	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85007000-85012400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr14:85009000-85012000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr14:85009800-85012000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr14:85010200-85012000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr14:85010200-85012000	Enhancers	Brain Germinal Matrix	brain
6	chr14:85010800-85012000	Enhancers	Fetal Brain Female	brain
7	chr14:85011000-85013200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:85011200-85012000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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