Variant report

Variant	rs17121735
Chromosome Location	chr1:61621949-61621950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:61620892..61622507-chr1:61624479..61626051,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1013708	0.88[YRI][hapmap]
rs17096997	0.86[ASW][hapmap]
rs17121558	1.00[AMR][1000 genomes]
rs17121688	0.90[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17121728	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs59792379	0.86[AFR][1000 genomes]
rs74086479	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008634	chr1:61613785-61671468	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61606000-61649000	Weak transcription	Spleen	Spleen
2	chr1:61607600-61622200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:61607800-61622600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:61609600-61622800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:61610000-61623400	Weak transcription	Fetal Brain Female	brain
6	chr1:61610200-61622200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:61610200-61623200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:61612000-61635800	Weak transcription	Lung	lung
9	chr1:61612800-61626200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:61614800-61622000	Weak transcription	Ovary	ovary
11	chr1:61615400-61635000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:61615400-61635600	Weak transcription	Hela-S3	cervix
13	chr1:61615600-61622600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:61615600-61622600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:61615800-61622400	Weak transcription	NHEK	skin
16	chr1:61616000-61622000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:61616000-61628000	Weak transcription	Gastric	stomach
18	chr1:61616800-61622200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:61616800-61623200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr1:61617000-61627800	Weak transcription	Esophagus	oesophagus
21	chr1:61618000-61622600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:61618000-61622600	Weak transcription	Brain Germinal Matrix	brain
23	chr1:61618000-61628000	Weak transcription	Pancreas	Pancrea
24	chr1:61618200-61622600	Weak transcription	Left Ventricle	heart
25	chr1:61618600-61623400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr1:61618800-61622200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:61618800-61622200	Weak transcription	Adipose Nuclei	Adipose
28	chr1:61618800-61622200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr1:61618800-61622400	Weak transcription	Fetal Muscle Leg	muscle
30	chr1:61618800-61622600	Weak transcription	Right Atrium	heart
31	chr1:61618800-61623000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr1:61618800-61623000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr1:61619000-61622000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr1:61619000-61622200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr1:61619000-61622400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:61619200-61622000	Weak transcription	Fetal Kidney	kidney
37	chr1:61619200-61622400	Weak transcription	A549	lung
38	chr1:61619200-61649000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr1:61619400-61622000	Weak transcription	Brain Cingulate Gyrus	brain
40	chr1:61619400-61622200	Weak transcription	Brain Angular Gyrus	brain
41	chr1:61619400-61622200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr1:61619600-61622000	Weak transcription	Fetal Lung	lung
43	chr1:61619600-61622400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr1:61619800-61622000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr1:61619800-61622000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr1:61619800-61623000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr1:61620000-61622000	Weak transcription	Brain Substantia Nigra	brain
48	chr1:61620000-61622200	Weak transcription	Fetal Intestine Small	intestine
49	chr1:61620600-61622200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr1:61620600-61622600	Weak transcription	Aorta	Aorta

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