Variant report

Variant	rs17096997
Chromosome Location	chr1:61654087-61654088
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61653223..61656070-chr1:61677370..61679141,2	MCF-7	breast:
2	chr1:61650344..61654950-chr1:61656587..61661937,8	K562	blood:
3	chr1:61653304..61654875-chr1:61673178..61675830,2	K562	blood:
4	chr1:61650174..61654945-chr1:61655876..61661937,8	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17121688	0.86[ASW][hapmap];0.80[LWK][hapmap]
rs17121735	0.86[ASW][hapmap]
rs17121795	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs17121796	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008634	chr1:61613785-61671468	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61650200-61654800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:61650400-61655800	Weak transcription	Colonic Mucosa	Colon
3	chr1:61650600-61654800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:61650600-61655000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:61650600-61655200	Enhancers	Brain Angular Gyrus	brain
6	chr1:61650600-61658600	Weak transcription	Fetal Intestine Large	intestine
7	chr1:61650600-61667600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:61650800-61664200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:61650800-61669200	Weak transcription	Fetal Intestine Small	intestine
10	chr1:61651000-61655800	Weak transcription	Fetal Kidney	kidney
11	chr1:61651000-61656400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:61651000-61656600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:61651000-61658800	Weak transcription	NHEK	skin
14	chr1:61651000-61663600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:61651200-61654400	Enhancers	Fetal Brain Male	brain
16	chr1:61651200-61655800	Weak transcription	A549	lung
17	chr1:61651200-61656000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr1:61651200-61664000	Weak transcription	Stomach Mucosa	stomach
19	chr1:61651400-61655800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:61651400-61656000	Weak transcription	K562	blood
21	chr1:61651400-61656800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:61651800-61654200	Enhancers	Left Ventricle	heart
23	chr1:61652200-61657200	Weak transcription	Ovary	ovary
24	chr1:61652600-61667800	Weak transcription	Fetal Stomach	stomach
25	chr1:61653000-61654200	Genic enhancers	HepG2	liver
26	chr1:61653000-61656600	Weak transcription	Fetal Heart	heart
27	chr1:61653200-61654200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr1:61653200-61654400	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr1:61653200-61656200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:61653200-61656400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr1:61653200-61668400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr1:61653400-61655800	Weak transcription	Pancreas	Pancrea
33	chr1:61653400-61656200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr1:61653400-61658400	Weak transcription	Liver	Liver
35	chr1:61653600-61655200	Enhancers	Brain Anterior Caudate	brain
36	chr1:61653600-61655200	Enhancers	Brain Cingulate Gyrus	brain
37	chr1:61653600-61655600	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr1:61653600-61656000	Weak transcription	Colon Smooth Muscle	Colon
39	chr1:61653600-61656800	Weak transcription	Adipose Nuclei	Adipose
40	chr1:61653600-61657000	Weak transcription	Fetal Muscle Leg	muscle
41	chr1:61653600-61657000	Weak transcription	Psoas Muscle	Psoas
42	chr1:61653600-61657000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr1:61653800-61654200	Weak transcription	Fetal Lung	lung
44	chr1:61653800-61654800	Weak transcription	Aorta	Aorta
45	chr1:61653800-61654800	Weak transcription	Right Atrium	heart
46	chr1:61653800-61655000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr1:61653800-61655200	Enhancers	Brain Substantia Nigra	brain
48	chr1:61653800-61656000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr1:61654000-61654400	Weak transcription	Fetal Brain Female	brain
50	chr1:61654000-61655400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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