Variant report

Variant	rs17121795
Chromosome Location	chr1:61652166-61652167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:61650344..61654950-chr1:61656587..61661937,8	K562	blood:
2	chr1:61650174..61654945-chr1:61655876..61661937,8	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17096997	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs17121796	1.00[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008634	chr1:61613785-61671468	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61638800-61652400	Weak transcription	Small Intestine	intestine
2	chr1:61649400-61653000	Weak transcription	Spleen	Spleen
3	chr1:61650000-61653800	Weak transcription	Gastric	stomach
4	chr1:61650200-61654800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:61650400-61653000	Weak transcription	Pancreas	Pancrea
6	chr1:61650400-61655800	Weak transcription	Colonic Mucosa	Colon
7	chr1:61650600-61652600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:61650600-61652600	Enhancers	Brain Cingulate Gyrus	brain
9	chr1:61650600-61652600	Enhancers	Fetal Stomach	stomach
10	chr1:61650600-61653000	Enhancers	Fetal Muscle Leg	muscle
11	chr1:61650600-61653000	Weak transcription	Right Ventricle	heart
12	chr1:61650600-61653400	Enhancers	Liver	Liver
13	chr1:61650600-61654000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr1:61650600-61654800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:61650600-61655000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:61650600-61655200	Enhancers	Brain Angular Gyrus	brain
17	chr1:61650600-61658600	Weak transcription	Fetal Intestine Large	intestine
18	chr1:61650600-61667600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:61650800-61652400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:61650800-61652400	Weak transcription	NHDF-Ad	bronchial
21	chr1:61650800-61652600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:61650800-61652600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr1:61650800-61652600	Enhancers	Brain Substantia Nigra	brain
24	chr1:61650800-61652600	Weak transcription	Fetal Brain Female	brain
25	chr1:61650800-61652800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr1:61650800-61653200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:61650800-61653600	Enhancers	Adipose Nuclei	Adipose
28	chr1:61650800-61653600	Enhancers	Colon Smooth Muscle	Colon
29	chr1:61650800-61653600	Enhancers	Rectal Smooth Muscle	rectum
30	chr1:61650800-61653800	Enhancers	Fetal Lung	lung
31	chr1:61650800-61664200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr1:61650800-61669200	Weak transcription	Fetal Intestine Small	intestine
33	chr1:61651000-61652600	Weak transcription	Brain Germinal Matrix	brain
34	chr1:61651000-61655800	Weak transcription	Fetal Kidney	kidney
35	chr1:61651000-61656400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:61651000-61656600	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr1:61651000-61658800	Weak transcription	NHEK	skin
38	chr1:61651000-61663600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr1:61651200-61653000	Enhancers	Fetal Heart	heart
40	chr1:61651200-61654400	Enhancers	Fetal Brain Male	brain
41	chr1:61651200-61655800	Weak transcription	A549	lung
42	chr1:61651200-61656000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr1:61651200-61664000	Weak transcription	Stomach Mucosa	stomach
44	chr1:61651400-61652400	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr1:61651400-61652600	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr1:61651400-61652600	Enhancers	Brain Hippocampus Middle	brain
47	chr1:61651400-61652600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr1:61651400-61652600	Weak transcription	HepG2	liver
49	chr1:61651400-61653000	Enhancers	Brain Anterior Caudate	brain
50	chr1:61651400-61655800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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