The 2.0 version of rSNPBase

Variant report

Variant rs17121796
Chromosome Location chr1:61654892-61654893
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61650400-61655800 Weak transcription Colonic Mucosa Colon
2 chr1:61650600-61655000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr1:61650600-61655200 Enhancers Brain Angular Gyrus brain
4 chr1:61650600-61658600 Weak transcription Fetal Intestine Large intestine
5 chr1:61650600-61667600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr1:61650800-61664200 Weak transcription Fetal Muscle Trunk muscle
7 chr1:61650800-61669200 Weak transcription Fetal Intestine Small intestine
8 chr1:61651000-61655800 Weak transcription Fetal Kidney kidney
9 chr1:61651000-61656400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr1:61651000-61656600 Enhancers Cortex derived primary cultured neurospheres brain
11 chr1:61651000-61658800 Weak transcription NHEK skin
12 chr1:61651000-61663600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
13 chr1:61651200-61655800 Weak transcription A549 lung
14 chr1:61651200-61656000 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr1:61651200-61664000 Weak transcription Stomach Mucosa stomach
16 chr1:61651400-61655800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr1:61651400-61656000 Weak transcription K562 blood
18 chr1:61651400-61656800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr1:61652200-61657200 Weak transcription Ovary ovary
20 chr1:61652600-61667800 Weak transcription Fetal Stomach stomach
21 chr1:61653000-61656600 Weak transcription Fetal Heart heart
22 chr1:61653200-61656200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr1:61653200-61656400 Weak transcription Muscle Satellite Cultured Cells --
24 chr1:61653200-61668400 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr1:61653400-61655800 Weak transcription Pancreas Pancrea
26 chr1:61653400-61656200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr1:61653400-61658400 Weak transcription Liver Liver
28 chr1:61653600-61655200 Enhancers Brain Anterior Caudate brain
29 chr1:61653600-61655200 Enhancers Brain Cingulate Gyrus brain
30 chr1:61653600-61655600 Enhancers Brain Inferior Temporal Lobe brain
31 chr1:61653600-61656000 Weak transcription Colon Smooth Muscle Colon
32 chr1:61653600-61656800 Weak transcription Adipose Nuclei Adipose
33 chr1:61653600-61657000 Weak transcription Fetal Muscle Leg muscle
34 chr1:61653600-61657000 Weak transcription Psoas Muscle Psoas
35 chr1:61653600-61657000 Weak transcription Rectal Smooth Muscle rectum
36 chr1:61653800-61655000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
37 chr1:61653800-61655200 Enhancers Brain Substantia Nigra brain
38 chr1:61653800-61656000 Weak transcription Stomach Smooth Muscle stomach
39 chr1:61654000-61655400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:61654000-61655800 Weak transcription Brain Germinal Matrix brain
41 chr1:61654000-61656000 Enhancers Brain Hippocampus Middle brain
42 chr1:61654000-61656800 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr1:61654000-61657000 Weak transcription Right Ventricle heart
44 chr1:61654200-61655000 Strong transcription HepG2 liver
45 chr1:61654200-61656600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr1:61654400-61655800 Weak transcription Fetal Brain Male brain
47 chr1:61654400-61657000 Weak transcription Fetal Lung lung
48 chr1:61654600-61655400 Enhancers Left Ventricle heart
49 chr1:61654600-61657000 Weak transcription Fetal Brain Female brain
50 chr1:61654600-61658400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015