Variant report

Variant	rs17123515
Chromosome Location	chr1:62819099-62819100
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11806573	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123530	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72927755	0.86[EUR][1000 genomes]
rs72927783	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62814600-62820600	Weak transcription	Pancreas	Pancrea
2	chr1:62814600-62826800	Weak transcription	Gastric	stomach
3	chr1:62814800-62820800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:62818000-62819200	Enhancers	Fetal Thymus	thymus
5	chr1:62818400-62819600	Enhancers	HepG2	liver
6	chr1:62818800-62820000	Enhancers	Fetal Muscle Leg	muscle
7	chr1:62819000-62820200	Weak transcription	Thymus	Thymus
8	chr1:62819000-62822200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr1:62819000-62822400	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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