Variant report

Variant	rs17123530
Chromosome Location	chr1:62823603-62823604
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11806573	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17123515	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72927755	0.86[EUR][1000 genomes]
rs72927783	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62814600-62826800	Weak transcription	Gastric	stomach
2	chr1:62819600-62824600	Weak transcription	HepG2	liver
3	chr1:62820000-62826800	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:62822800-62824400	Weak transcription	NHEK	skin
5	chr1:62822800-62824600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:62822800-62824600	Weak transcription	HMEC	breast
7	chr1:62823200-62825600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:62823200-62825800	Enhancers	Fetal Thymus	thymus
9	chr1:62823600-62824600	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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