Variant report

Variant	rs17123828
Chromosome Location	chr1:63247451-63247452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10889373	0.82[AMR][1000 genomes]
rs17316337	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2803241	0.88[MEX][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17123828	KCNMB1	trans	lymphoblastoid	seeQTL
rs17123828	CACHD1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63244200-63249200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:63244200-63249400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:63245800-63248400	Weak transcription	Placenta	Placenta
4	chr1:63245800-63249400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:63246000-63249200	Weak transcription	K562	blood
6	chr1:63246200-63248800	Weak transcription	A549	lung
7	chr1:63246800-63248400	Enhancers	HepG2	liver
8	chr1:63247000-63248800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr1:63247400-63247600	Enhancers	Fetal Brain Male	brain
10	chr1:63247400-63248000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:63247400-63248400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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