Variant report

Variant	rs17124848
Chromosome Location	chr10:110358531-110358532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11194202	0.80[ASN][1000 genomes]
rs11818018	0.80[ASN][1000 genomes]
rs7082065	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73416669	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73416671	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831983	chr10:110267919-110467318	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1050244	chr10:110279647-110779693	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2761624	chr10:110303323-110411575	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv895990	chr10:110354980-110452911	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110354800-110358800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:110356600-110362200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:110356800-110359000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:110357600-110358600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr10:110357800-110358600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:110357800-110358600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:110357800-110358600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:110357800-110358600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:110357800-110358600	Enhancers	Pancreas	Pancrea
10	chr10:110357800-110358600	Enhancers	Spleen	Spleen
11	chr10:110357800-110358800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr10:110357800-110359000	Enhancers	Liver	Liver
13	chr10:110357800-110359200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:110357800-110360000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:110358000-110359000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
16	chr10:110358000-110359000	Enhancers	HepG2	liver
17	chr10:110358200-110358600	Enhancers	NH-A	brain
18	chr10:110358200-110359000	Active TSS	GM12878-XiMat	blood
19	chr10:110358400-110358600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
20	chr10:110358400-110358600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
21	chr10:110358400-110358600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
22	chr10:110358400-110358600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
23	chr10:110358400-110358600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
24	chr10:110358400-110358800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
25	chr10:110358400-110358800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell

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