Variant report

Variant	rs17125683
Chromosome Location	chr12:62420959-62420960
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10506436	1.00[YRI][hapmap]
rs11174282	0.92[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.96[MKK][hapmap];0.88[ASN][1000 genomes]
rs12228665	0.85[CHB][hapmap]
rs9669061	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs9739327	0.87[CEU][hapmap]
rs9739750	0.94[CEU][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17125683	SNORD59A	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62420000-62422600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62420600-62421000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:62420600-62421600	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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