Variant report

Variant	rs9739327
Chromosome Location	chr12:62458724-62458725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10506432	0.82[JPT][hapmap]
rs10747951	0.82[JPT][hapmap]
rs10877786	0.83[JPT][hapmap]
rs10877787	0.82[JPT][hapmap]
rs10877788	0.82[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10877789	0.82[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10877790	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10877791	0.83[ASN][1000 genomes]
rs10877797	0.82[CEU][hapmap]
rs10877798	0.82[CEU][hapmap]
rs10877799	0.82[CEU][hapmap]
rs11174294	0.82[JPT][hapmap]
rs11174296	0.82[JPT][hapmap]
rs11174305	0.81[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11174307	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11174308	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11174309	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11174310	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11174311	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11174314	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11174316	0.81[CEU][hapmap];0.91[CHB][hapmap];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11174323	0.81[ASN][1000 genomes]
rs11174339	0.82[CEU][hapmap]
rs12425938	0.81[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12815741	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12827315	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1348527	0.91[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs1444254	0.83[ASN][1000 genomes]
rs1444255	0.80[AMR][1000 genomes]
rs1444258	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1444259	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1545305	0.82[CEU][hapmap]
rs17125683	0.87[CEU][hapmap]
rs1920101	0.82[CEU][hapmap]
rs1920102	0.82[CEU][hapmap]
rs2009479	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35115655	0.82[ASN][1000 genomes]
rs35488183	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs71465132	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9668833	0.82[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9669061	0.88[CEU][hapmap];0.88[YRI][hapmap]
rs9669389	0.81[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9706516	0.83[JPT][hapmap]
rs9738190	0.82[JPT][hapmap]
rs9739326	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9739658	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9739661	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9739750	0.94[CEU][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs9739766	0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9739956	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv975607	chr12:62450308-62459569	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62448000-62458800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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