Variant report

Variant	rs11174305
Chromosome Location	chr12:62485243-62485244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1009168	0.81[ASN][1000 genomes]
rs1025935	0.90[JPT][hapmap];0.84[MEX][hapmap];0.81[ASN][1000 genomes]
rs10877788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10877789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10877790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877791	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10877797	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs10877798	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs10877799	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs11174307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174308	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11174314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174323	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11174324	0.93[JPT][hapmap]
rs11174329	0.81[ASN][1000 genomes]
rs11174334	0.95[JPT][hapmap];0.89[MEX][hapmap];0.81[ASN][1000 genomes]
rs11174339	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs12423325	0.81[ASN][1000 genomes]
rs12425896	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs12425938	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12426217	0.81[ASN][1000 genomes]
rs12579846	0.90[JPT][hapmap];0.85[MEX][hapmap];0.81[ASN][1000 genomes]
rs12815741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12826489	0.81[ASN][1000 genomes]
rs12827315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12829595	0.81[ASN][1000 genomes]
rs1348527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1373456	0.90[JPT][hapmap]
rs1444249	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs1444250	0.90[JPT][hapmap]
rs1444254	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1444255	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1444258	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1444259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545305	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs1920101	0.87[CEU][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes]
rs1920102	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1920103	0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs1975494	0.81[ASN][1000 genomes]
rs1985875	0.81[ASN][1000 genomes]
rs2009479	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35115655	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35194524	0.81[ASN][1000 genomes]
rs35488183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71465132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9668015	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9668289	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9668369	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9668833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9668865	0.81[ASN][1000 genomes]
rs9669389	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9706154	0.81[ASN][1000 genomes]
rs9738294	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9739326	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9739327	0.81[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9739546	0.81[ASN][1000 genomes]
rs9739658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9739661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9739682	0.90[JPT][hapmap];0.85[MEX][hapmap]
rs9739766	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11174305	CYSLTR2	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62484200-62489800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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