Variant report

Variant	rs1920103
Chromosome Location	chr12:62522340-62522341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62520088..62522630-chr12:62526119..62528380,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1009168	0.84[ASN][1000 genomes]
rs1025935	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10784281	0.85[ASN][1000 genomes]
rs10784282	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10877788	0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs10877789	0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs10877790	0.85[EUR][1000 genomes]
rs10877792	0.85[ASN][1000 genomes]
rs10877797	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10877798	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10877799	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10877800	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10877801	0.81[ASN][1000 genomes]
rs10877802	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11174305	0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs11174307	0.85[EUR][1000 genomes]
rs11174308	0.85[EUR][1000 genomes]
rs11174309	0.85[EUR][1000 genomes]
rs11174310	0.85[EUR][1000 genomes]
rs11174311	0.85[EUR][1000 genomes]
rs11174314	0.85[EUR][1000 genomes]
rs11174316	0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs11174324	0.88[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs11174325	0.83[ASN][1000 genomes]
rs11174329	0.84[ASN][1000 genomes]
rs11174334	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11174339	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11174347	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11174353	0.81[ASN][1000 genomes]
rs12423325	0.84[ASN][1000 genomes]
rs12425896	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12425938	0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs12426217	0.84[ASN][1000 genomes]
rs12579846	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12815741	0.83[EUR][1000 genomes]
rs12826489	0.84[ASN][1000 genomes]
rs12827315	0.85[EUR][1000 genomes]
rs12829595	0.84[ASN][1000 genomes]
rs1348527	0.84[JPT][hapmap]
rs1373456	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1444249	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1444250	0.81[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs1444255	0.82[EUR][1000 genomes]
rs1444258	0.85[EUR][1000 genomes]
rs1444259	0.85[EUR][1000 genomes]
rs1545305	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1920101	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1920102	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1920105	0.82[ASN][1000 genomes]
rs1975494	0.84[ASN][1000 genomes]
rs1985875	0.84[ASN][1000 genomes]
rs2009479	0.84[EUR][1000 genomes]
rs34431378	0.81[ASN][1000 genomes]
rs35194524	0.84[ASN][1000 genomes]
rs35488183	0.84[EUR][1000 genomes]
rs71465132	0.85[EUR][1000 genomes]
rs9668015	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs9668289	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs9668369	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9668676	0.86[ASN][1000 genomes]
rs9668833	0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs9668865	0.84[ASN][1000 genomes]
rs9669389	0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs9706154	0.84[ASN][1000 genomes]
rs9738002	0.80[JPT][hapmap]
rs9738294	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9739326	0.85[EUR][1000 genomes]
rs9739546	0.84[ASN][1000 genomes]
rs9739658	0.85[EUR][1000 genomes]
rs9739661	0.85[EUR][1000 genomes]
rs9739682	0.80[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs9739766	0.84[JPT][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv559154	chr12:62509757-62522787	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62519800-62525600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:62521400-62522400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:62521400-62522600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:62521400-62522600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:62521400-62522600	Enhancers	HMEC	breast
6	chr12:62521600-62522600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr12:62521800-62522400	Enhancers	NHEK	skin
8	chr12:62522000-62523000	Enhancers	Primary hematopoietic stem cells	blood
9	chr12:62522000-62523000	Bivalent Enhancer	HUVEC	blood vessel
10	chr12:62522200-62522600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr12:62522200-62522600	Enhancers	Ovary	ovary
12	chr12:62522200-62522600	Enhancers	Stomach Mucosa	stomach
13	chr12:62522200-62522600	Enhancers	NHDF-Ad	bronchial
14	chr12:62522200-62522800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr12:62522200-62523400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:62522200-62523600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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