Variant report

Variant	rs10877801
Chromosome Location	chr12:62544622-62544623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10784282	0.88[CHB][hapmap];0.95[ASN][1000 genomes]
rs10877797	0.83[CHB][hapmap];0.86[ASN][1000 genomes]
rs10877798	0.83[CHB][hapmap];0.87[ASN][1000 genomes]
rs10877799	0.83[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs10877800	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10877802	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap]
rs10877804	1.00[YRI][hapmap]
rs11174339	0.82[CHB][hapmap];0.88[ASN][1000 genomes]
rs11174347	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545305	0.83[CHB][hapmap];0.87[ASN][1000 genomes]
rs1920096	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1920103	0.81[ASN][1000 genomes]
rs1920104	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1920105	0.97[ASN][1000 genomes]
rs34431378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9738002	0.85[CEU][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62535800-62545000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62538000-62545000	Weak transcription	Pancreas	Pancrea
3	chr12:62540800-62544800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr12:62542400-62545000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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