Variant report

Variant	rs1920096
Chromosome Location	chr12:62554918-62554919
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10784287	0.81[ASN][1000 genomes]
rs10877800	1.00[YRI][hapmap]
rs10877801	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10877802	1.00[YRI][hapmap]
rs10877804	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11174347	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11174353	0.81[AFR][1000 genomes]
rs11174358	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11174360	0.90[CHB][hapmap]
rs11174361	0.90[CHB][hapmap]
rs1406799	0.81[ASN][1000 genomes]
rs1920087	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs2884779	0.86[CHB][hapmap]
rs34431378	0.81[AFR][1000 genomes]
rs3759290	0.95[CHB][hapmap]
rs4143667	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs7305482	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62552600-62557600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:62553000-62560200	Weak transcription	Adipose Nuclei	Adipose
3	chr12:62553200-62556000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr12:62553600-62555800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr12:62554000-62555600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr12:62554000-62557200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:62554200-62555800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:62554200-62555800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr12:62554200-62556000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr12:62554600-62555200	Weak transcription	Primary T cells from cord blood	blood
11	chr12:62554600-62555800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr12:62554600-62557200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr12:62554600-62561800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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