Variant report

Variant	rs34431378
Chromosome Location	chr12:62551514-62551515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10784282	0.95[ASN][1000 genomes]
rs10877797	0.86[ASN][1000 genomes]
rs10877798	0.87[ASN][1000 genomes]
rs10877799	0.86[ASN][1000 genomes]
rs10877800	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10877801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174339	0.88[ASN][1000 genomes]
rs11174347	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545305	0.87[ASN][1000 genomes]
rs1920096	0.81[AFR][1000 genomes]
rs1920103	0.81[ASN][1000 genomes]
rs1920104	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1920105	0.97[ASN][1000 genomes]
rs9738002	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62546200-62552000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:62550800-62552200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:62551000-62554600	Enhancers	Primary T cells from cord blood	blood
4	chr12:62551200-62552200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr12:62551200-62553600	Enhancers	Primary hematopoietic stem cells	blood
6	chr12:62551400-62551600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:62551400-62553200	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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