Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62527744..62530302-chr12:62532927..62534657,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198673	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1025935	0.90[JPT][hapmap]
rs10877797	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10877798	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10877799	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10877800	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10877801	0.88[CHB][hapmap];0.95[ASN][1000 genomes]
rs10877802	0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs11174324	0.86[JPT][hapmap]
rs11174334	0.90[JPT][hapmap]
rs11174339	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11174347	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11174353	0.95[ASN][1000 genomes]
rs11174358	0.83[CHD][hapmap]
rs12425896	0.90[JPT][hapmap]
rs12579846	0.90[JPT][hapmap]
rs1373456	0.90[JPT][hapmap]
rs1444249	0.89[JPT][hapmap]
rs1444250	0.90[JPT][hapmap]
rs1545305	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1920101	0.95[JPT][hapmap]
rs1920103	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1920104	0.81[ASN][1000 genomes]
rs1920105	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34431378	0.95[ASN][1000 genomes]
rs9668015	0.90[JPT][hapmap]
rs9668289	0.90[JPT][hapmap];0.89[TSI][hapmap]
rs9668369	0.90[JPT][hapmap]
rs9738002	0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs9738294	0.90[JPT][hapmap]
rs9739682	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3387916	chr12:62534325-62534606	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62533600-62535800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62533800-62535200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr12:62534000-62534800	Enhancers	Ovary	ovary
4	chr12:62534000-62535800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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