Variant report

Variant	rs11174339
Chromosome Location	chr12:62526332-62526333
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62520088..62522630-chr12:62526119..62528380,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1009168	0.82[ASN][1000 genomes]
rs1025935	0.80[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10784281	0.82[ASN][1000 genomes]
rs10784282	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10877788	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs10877789	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs10877790	0.89[EUR][1000 genomes]
rs10877792	0.82[ASN][1000 genomes]
rs10877797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10877798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10877799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10877800	0.95[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10877801	0.82[CHB][hapmap];0.88[ASN][1000 genomes]
rs10877802	0.90[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs11174305	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs11174307	0.89[EUR][1000 genomes]
rs11174308	0.89[EUR][1000 genomes]
rs11174309	0.89[EUR][1000 genomes]
rs11174310	0.89[EUR][1000 genomes]
rs11174311	0.89[EUR][1000 genomes]
rs11174314	0.89[EUR][1000 genomes]
rs11174316	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs11174324	0.83[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs11174325	0.81[ASN][1000 genomes]
rs11174329	0.82[ASN][1000 genomes]
rs11174334	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs11174347	0.95[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11174353	0.88[ASN][1000 genomes]
rs12423325	0.82[ASN][1000 genomes]
rs12425896	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs12425938	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs12426217	0.82[ASN][1000 genomes]
rs12579846	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs12815741	0.87[EUR][1000 genomes]
rs12826489	0.82[ASN][1000 genomes]
rs12827315	0.89[EUR][1000 genomes]
rs12829595	0.82[ASN][1000 genomes]
rs1373456	0.90[JPT][hapmap]
rs1444249	0.89[JPT][hapmap]
rs1444250	0.90[JPT][hapmap]
rs1444255	0.84[EUR][1000 genomes]
rs1444258	0.89[EUR][1000 genomes]
rs1444259	0.89[EUR][1000 genomes]
rs1545305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1920101	1.00[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1920102	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1920103	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1920105	0.89[ASN][1000 genomes]
rs1975494	0.81[ASN][1000 genomes]
rs1985875	0.82[ASN][1000 genomes]
rs2009479	0.88[EUR][1000 genomes]
rs34431378	0.88[ASN][1000 genomes]
rs35194524	0.82[ASN][1000 genomes]
rs35488183	0.88[EUR][1000 genomes]
rs71465132	0.89[EUR][1000 genomes]
rs9668015	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9668289	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9668369	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9668676	0.83[ASN][1000 genomes]
rs9668833	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs9668865	0.82[ASN][1000 genomes]
rs9669389	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs9706154	0.82[ASN][1000 genomes]
rs9738002	0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs9738294	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9739326	0.89[EUR][1000 genomes]
rs9739327	0.82[CEU][hapmap]
rs9739546	0.82[ASN][1000 genomes]
rs9739658	0.89[EUR][1000 genomes]
rs9739661	0.89[EUR][1000 genomes]
rs9739682	0.90[JPT][hapmap];0.82[YRI][hapmap];0.80[ASN][1000 genomes]
rs9739766	0.81[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62522600-62526600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr12:62525400-62526400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:62526000-62526400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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