Variant report

Variant	rs11174347
Chromosome Location	chr12:62538854-62538855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1025935	0.90[JPT][hapmap]
rs10784282	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10877797	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10877798	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10877799	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10877800	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10877801	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10877802	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10877804	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs11174316	0.80[TSI][hapmap]
rs11174324	0.86[JPT][hapmap]
rs11174334	0.90[JPT][hapmap]
rs11174339	0.95[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11174353	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174358	0.89[CHD][hapmap];0.89[MEX][hapmap]
rs12425896	0.90[JPT][hapmap]
rs12579846	0.90[JPT][hapmap]
rs1373456	0.90[JPT][hapmap]
rs1444249	0.89[JPT][hapmap]
rs1444250	0.90[JPT][hapmap]
rs1545305	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1920096	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1920101	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs1920103	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1920104	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1920105	0.98[ASN][1000 genomes]
rs34431378	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9668015	0.90[JPT][hapmap]
rs9668289	0.90[JPT][hapmap]
rs9668369	0.90[JPT][hapmap]
rs9738002	0.91[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9738294	0.90[JPT][hapmap]
rs9739682	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62535800-62542000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62535800-62545000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:62538000-62545000	Weak transcription	Pancreas	Pancrea

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