Variant report

Variant	rs10877804
Chromosome Location	chr12:62557130-62557131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10784287	0.83[ASN][1000 genomes]
rs10877800	1.00[YRI][hapmap]
rs10877801	1.00[YRI][hapmap]
rs10877802	1.00[YRI][hapmap]
rs11174347	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs11174358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174360	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs11174361	0.95[CHB][hapmap]
rs1406799	0.83[ASN][1000 genomes]
rs1920087	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs1920096	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2884779	0.90[CHB][hapmap]
rs3759290	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4143667	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs7305206	0.81[CHB][hapmap]
rs7305482	1.00[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62552600-62557600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:62553000-62560200	Weak transcription	Adipose Nuclei	Adipose
3	chr12:62554000-62557200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:62554600-62557200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:62554600-62561800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:62555200-62557400	Enhancers	Primary T cells from cord blood	blood
7	chr12:62556400-62557400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr12:62556400-62557400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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