Variant report

Variant	rs10784287
Chromosome Location	chr12:62577248-62577249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10877804	0.83[ASN][1000 genomes]
rs10877817	0.86[ASN][1000 genomes]
rs11174358	0.83[ASN][1000 genomes]
rs11174360	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11174361	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174368	0.95[ASN][1000 genomes]
rs11174369	0.96[ASN][1000 genomes]
rs11174373	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11174377	0.87[ASN][1000 genomes]
rs11174378	0.86[ASN][1000 genomes]
rs11174383	0.81[ASN][1000 genomes]
rs12823493	0.86[ASN][1000 genomes]
rs1406799	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920087	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920096	0.81[ASN][1000 genomes]
rs3759290	0.96[ASN][1000 genomes]
rs4143667	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7305482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7308544	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62568800-62581800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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