Variant report

Variant	rs9669389
Chromosome Location	chr12:62490509-62490510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62488835..62490732-chr12:62498264..62500543,2	K562	blood:

Variant related genes	Relation type
ENSG00000198673	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1009168	0.82[ASN][1000 genomes]
rs1025935	0.90[JPT][hapmap];0.84[MEX][hapmap];0.82[ASN][1000 genomes]
rs10506432	0.81[YRI][hapmap]
rs10747951	0.81[YRI][hapmap]
rs10877787	0.81[YRI][hapmap]
rs10877788	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877789	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877790	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10877791	0.99[ASN][1000 genomes]
rs10877797	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs10877798	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs10877799	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs11174294	0.81[YRI][hapmap]
rs11174305	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174307	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174308	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174309	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174310	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174311	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11174314	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174316	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174323	0.97[ASN][1000 genomes]
rs11174324	0.93[JPT][hapmap]
rs11174329	0.82[ASN][1000 genomes]
rs11174334	0.95[JPT][hapmap];0.89[MEX][hapmap];0.82[ASN][1000 genomes]
rs11174339	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs12423325	0.82[ASN][1000 genomes]
rs12425896	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs12425938	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12426217	0.82[ASN][1000 genomes]
rs12579846	0.90[JPT][hapmap];0.85[MEX][hapmap];0.82[ASN][1000 genomes]
rs12815741	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12826489	0.82[ASN][1000 genomes]
rs12827315	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12829595	0.82[ASN][1000 genomes]
rs1348527	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1373456	0.90[JPT][hapmap]
rs1444249	0.89[JPT][hapmap]
rs1444250	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1444254	0.99[ASN][1000 genomes]
rs1444255	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1444258	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1444259	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1545305	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs1920101	0.87[CEU][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes]
rs1920102	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs1920103	0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs1975494	0.81[ASN][1000 genomes]
rs1985875	0.82[ASN][1000 genomes]
rs2009479	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35115655	0.98[ASN][1000 genomes]
rs35194524	0.82[ASN][1000 genomes]
rs35488183	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465132	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9668015	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9668289	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9668369	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9668676	0.81[ASN][1000 genomes]
rs9668833	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9668865	0.82[ASN][1000 genomes]
rs9706154	0.82[ASN][1000 genomes]
rs9706516	0.81[YRI][hapmap]
rs9738190	0.81[YRI][hapmap]
rs9738294	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9739326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9739327	0.81[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9739546	0.82[ASN][1000 genomes]
rs9739658	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9739661	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9739682	0.90[JPT][hapmap];0.85[MEX][hapmap];0.81[ASN][1000 genomes]
rs9739750	0.81[MKK][hapmap]
rs9739766	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9669389	CYSLTR2	trans	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62489800-62492200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62489800-62492200	Enhancers	Fetal Kidney	kidney
3	chr12:62490400-62490600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:62490400-62492000	Enhancers	Fetal Intestine Small	intestine

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