Variant report

Variant	rs35115655
Chromosome Location	chr12:62498857-62498858
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1009168	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1025935	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10784281	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10877788	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10877789	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10877790	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10877791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10877792	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11174305	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11174307	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11174308	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11174309	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11174310	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11174311	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11174314	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11174316	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11174323	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174324	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11174325	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11174329	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11174334	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12423325	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12425896	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12425938	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12426217	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12579846	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12815741	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12826489	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12827315	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12829595	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1348527	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373456	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1444249	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1444250	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1444254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1444255	0.81[AFR][1000 genomes]
rs1444258	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1444259	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1975494	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1985875	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2009479	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs35194524	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35488183	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs71465132	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9668015	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9668369	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9668676	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9668833	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9668865	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9669389	0.98[ASN][1000 genomes]
rs9706154	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9738122	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9738294	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9739326	0.98[ASN][1000 genomes]
rs9739327	0.82[ASN][1000 genomes]
rs9739546	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9739658	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9739661	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9739682	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9739766	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62497000-62499600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:62497600-62500200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr12:62497600-62500200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr12:62497600-62500200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr12:62497800-62500600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr12:62498200-62500400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:62498600-62499000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:62498600-62499600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr12:62498800-62499000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr12:62498800-62499200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr12:62498800-62500200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr12:62498800-62500200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr12:62498800-62500200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr12:62498800-62500200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr12:62498800-62500400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr12:62498800-62500800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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