Variant report

Variant	rs1348527
Chromosome Location	chr12:62496884-62496885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1009168	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1025935	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10784281	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10877788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10877789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10877790	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10877791	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10877792	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10877797	0.81[JPT][hapmap]
rs10877798	0.81[JPT][hapmap]
rs11174305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11174307	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11174308	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11174309	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11174310	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11174311	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11174314	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11174316	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11174323	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174324	0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11174325	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11174329	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11174334	1.00[CEU][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12423325	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12425896	0.95[CEU][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12425938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12426217	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12579846	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12815741	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12826489	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12827315	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12829595	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1373456	0.95[CEU][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1444249	0.95[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1444250	0.95[CEU][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1444254	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1444258	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1444259	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1545305	0.81[JPT][hapmap]
rs1920101	0.86[JPT][hapmap]
rs1920103	0.84[JPT][hapmap]
rs1975494	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1985875	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2009479	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs35115655	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35194524	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35488183	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs71465132	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9668015	0.95[CEU][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9668289	0.90[JPT][hapmap]
rs9668369	0.95[CEU][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9668676	0.90[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9668833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9668865	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9669389	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9706154	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9738122	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9738294	0.95[CEU][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9739326	0.98[ASN][1000 genomes]
rs9739327	0.91[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs9739546	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9739658	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9739661	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9739682	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9739766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62493400-62497000	Weak transcription	Pancreas	Pancrea
2	chr12:62495600-62498200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:62496600-62498800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:62496800-62497000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr12:62496800-62497600	Enhancers	Primary hematopoietic stem cells	blood

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