Variant report

Variant	rs10877788
Chromosome Location	chr12:62481831-62481832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1009168	0.82[ASN][1000 genomes]
rs1025935	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10506432	0.80[YRI][hapmap]
rs10747951	0.80[YRI][hapmap]
rs10877789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10877791	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10877797	0.88[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs10877798	0.88[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs10877799	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs11174305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174308	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11174314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174323	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11174324	0.94[JPT][hapmap]
rs11174329	0.82[ASN][1000 genomes]
rs11174334	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs11174339	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs12423325	0.82[ASN][1000 genomes]
rs12425896	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs12425938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12426217	0.82[ASN][1000 genomes]
rs12579846	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs12815741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12826489	0.82[ASN][1000 genomes]
rs12827315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12829595	0.82[ASN][1000 genomes]
rs1348527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1373456	0.91[JPT][hapmap]
rs1444249	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1444250	0.91[JPT][hapmap]
rs1444254	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1444255	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1444258	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1444259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1545305	0.88[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs1920101	0.88[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs1920102	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1920103	0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs1975494	0.81[ASN][1000 genomes]
rs1985875	0.82[ASN][1000 genomes]
rs2009479	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35115655	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35194524	0.82[ASN][1000 genomes]
rs35488183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9668015	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9668289	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9668369	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs9668676	0.81[ASN][1000 genomes]
rs9668833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9668865	0.82[ASN][1000 genomes]
rs9669389	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9706154	0.82[ASN][1000 genomes]
rs9706516	0.80[YRI][hapmap]
rs9738294	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs9739326	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9739327	0.82[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9739546	0.82[ASN][1000 genomes]
rs9739658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9739661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9739682	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9739766	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62481800-62482400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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