Variant report

Variant	rs2009479
Chromosome Location	chr12:62497391-62497392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1009168	0.80[ASN][1000 genomes]
rs1025935	0.80[ASN][1000 genomes]
rs10877788	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10877789	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10877790	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10877791	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10877797	0.89[EUR][1000 genomes]
rs10877798	0.89[EUR][1000 genomes]
rs10877799	0.89[EUR][1000 genomes]
rs11174305	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11174307	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174308	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174309	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174310	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174311	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174314	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174316	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11174323	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11174329	0.80[ASN][1000 genomes]
rs11174334	0.80[ASN][1000 genomes]
rs11174339	0.88[EUR][1000 genomes]
rs12423325	0.80[ASN][1000 genomes]
rs12425896	0.80[ASN][1000 genomes]
rs12425938	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12426217	0.80[ASN][1000 genomes]
rs12579846	0.80[ASN][1000 genomes]
rs12815741	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12826489	0.80[ASN][1000 genomes]
rs12827315	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12829595	0.80[ASN][1000 genomes]
rs1348527	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1444254	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1444255	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1444258	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1444259	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1545305	0.89[EUR][1000 genomes]
rs1920101	0.89[EUR][1000 genomes]
rs1920102	0.89[EUR][1000 genomes]
rs1920103	0.84[EUR][1000 genomes]
rs1985875	0.80[ASN][1000 genomes]
rs35115655	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs35194524	0.80[ASN][1000 genomes]
rs35488183	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71465132	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9668015	0.80[ASN][1000 genomes]
rs9668369	0.80[ASN][1000 genomes]
rs9668833	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9668865	0.80[ASN][1000 genomes]
rs9669389	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9706154	0.80[ASN][1000 genomes]
rs9738294	0.80[ASN][1000 genomes]
rs9739326	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9739327	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9739546	0.80[ASN][1000 genomes]
rs9739658	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9739661	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9739766	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62495600-62498200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62496600-62498800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:62496800-62497600	Enhancers	Primary hematopoietic stem cells	blood
4	chr12:62497000-62499600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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