Variant report

Variant	rs9668865
Chromosome Location	chr12:62507589-62507590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1009168	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025935	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784281	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10877788	0.82[ASN][1000 genomes]
rs10877789	0.82[ASN][1000 genomes]
rs10877790	0.81[ASN][1000 genomes]
rs10877791	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10877792	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10877797	0.83[ASN][1000 genomes]
rs10877798	0.82[ASN][1000 genomes]
rs10877799	0.80[ASN][1000 genomes]
rs11174305	0.81[ASN][1000 genomes]
rs11174307	0.82[ASN][1000 genomes]
rs11174308	0.82[ASN][1000 genomes]
rs11174309	0.82[ASN][1000 genomes]
rs11174310	0.82[ASN][1000 genomes]
rs11174314	0.82[ASN][1000 genomes]
rs11174316	0.82[ASN][1000 genomes]
rs11174323	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11174324	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11174325	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174329	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174334	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174339	0.82[ASN][1000 genomes]
rs12423325	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12425896	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12425938	0.81[ASN][1000 genomes]
rs12426217	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12579846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12815741	0.82[ASN][1000 genomes]
rs12826489	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12827315	0.82[ASN][1000 genomes]
rs12829595	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348527	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1373456	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1444249	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1444250	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1444254	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1444258	0.81[ASN][1000 genomes]
rs1444259	0.81[ASN][1000 genomes]
rs1545305	0.82[ASN][1000 genomes]
rs1920101	0.93[ASN][1000 genomes]
rs1920102	0.83[ASN][1000 genomes]
rs1920103	0.84[ASN][1000 genomes]
rs1975494	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1985875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2009479	0.80[ASN][1000 genomes]
rs35115655	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35194524	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35488183	0.82[ASN][1000 genomes]
rs9668015	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9668289	0.98[ASN][1000 genomes]
rs9668369	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9668676	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9668833	0.81[ASN][1000 genomes]
rs9669389	0.82[ASN][1000 genomes]
rs9706154	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9738122	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9738294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9739326	0.82[ASN][1000 genomes]
rs9739546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9739658	0.81[ASN][1000 genomes]
rs9739661	0.82[ASN][1000 genomes]
rs9739682	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9739766	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62507000-62507800	Enhancers	H1 Cell Line	embryonic stem cell
2	chr12:62507000-62508000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr12:62507000-62508000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:62507000-62508200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:62507000-62508200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:62507200-62507800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr12:62507200-62507800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr12:62507200-62508000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:62507200-62508200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr12:62507400-62507800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr12:62507400-62507800	Enhancers	HUES64 Cell Line	embryonic stem cell

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