Variant report

Variant	rs17125705
Chromosome Location	chr1:102371076-102371077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10782860	0.96[ASN][1000 genomes]
rs11164329	0.96[ASN][1000 genomes]
rs12060073	0.96[ASN][1000 genomes]
rs12564023	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12730585	0.87[ASN][1000 genomes]
rs1360997	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1415106	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17125667	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs17125689	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17125729	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74107128	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7511844	0.96[ASN][1000 genomes]
rs7512170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534442	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522156	chr1:102309649-102421714	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1004240	chr1:102360610-102428344	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012856	chr1:102360610-102438432	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv520768	chr1:102366140-102435130	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102365200-102373000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:102370000-102371400	Enhancers	Fetal Lung	lung
3	chr1:102370000-102373200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:102370200-102371800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr1:102370400-102371400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:102370400-102373600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:102370800-102371600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:102370800-102371800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:102370800-102373400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:102370800-102373600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:102371000-102371200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:102371000-102371200	Enhancers	Fetal Heart	heart
13	chr1:102371000-102371400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr1:102371000-102371400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:102371000-102371800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr1:102371000-102373000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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