Variant report

Variant	rs7534442
Chromosome Location	chr1:102378636-102378637
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:102378623-102378869	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr1:102378606-102378822	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr1:102378606-102378916	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr1:102378608-102378872	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
OLFM3	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10782860	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11164329	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12060073	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12130645	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs12144932	0.82[EUR][1000 genomes]
rs12564023	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12730585	0.84[ASN][1000 genomes]
rs12731963	0.83[EUR][1000 genomes]
rs1360997	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1415106	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1415107	0.83[EUR][1000 genomes]
rs17125667	0.88[JPT][hapmap];0.81[YRI][hapmap]
rs17125689	0.97[ASN][1000 genomes]
rs17125705	0.97[ASN][1000 genomes]
rs17125729	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17472751	0.82[EUR][1000 genomes]
rs17472807	0.82[EUR][1000 genomes]
rs74107128	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7511844	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7512170	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522156	chr1:102309649-102421714	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1004240	chr1:102360610-102428344	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012856	chr1:102360610-102438432	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv520768	chr1:102366140-102435130	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2756852	chr1:102372339-102417093	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2758953	chr1:102372339-102417093	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv462628	chr1:102376258-102473559	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv546900	chr1:102376258-102473559	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102378000-102379200	Weak transcription	Fetal Heart	heart

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