Variant report

Variant	rs17127667
Chromosome Location	chr1:103725007-103725008
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10437032	1.00[EUR][1000 genomes]
rs10493994	1.00[EUR][1000 genomes]
rs11164724	1.00[EUR][1000 genomes]
rs11164725	1.00[EUR][1000 genomes]
rs11164729	1.00[AMR][1000 genomes]
rs11164730	1.00[EUR][1000 genomes]
rs11164731	1.00[EUR][1000 genomes]
rs11164733	1.00[EUR][1000 genomes]
rs11164735	1.00[EUR][1000 genomes]
rs11164736	1.00[EUR][1000 genomes]
rs11164737	1.00[EUR][1000 genomes]
rs11164738	1.00[EUR][1000 genomes]
rs11164739	1.00[EUR][1000 genomes]
rs11164751	1.00[EUR][1000 genomes]
rs11164752	1.00[EUR][1000 genomes]
rs12058864	1.00[EUR][1000 genomes]
rs12059958	1.00[EUR][1000 genomes]
rs12060328	1.00[EUR][1000 genomes]
rs12060714	1.00[EUR][1000 genomes]
rs12061112	1.00[EUR][1000 genomes]
rs12061317	1.00[EUR][1000 genomes]
rs12062539	1.00[EUR][1000 genomes]
rs12062593	1.00[EUR][1000 genomes]
rs12068683	1.00[EUR][1000 genomes]
rs12072826	1.00[EUR][1000 genomes]
rs12072971	1.00[EUR][1000 genomes]
rs12074606	1.00[EUR][1000 genomes]
rs12077747	1.00[EUR][1000 genomes]
rs12078453	1.00[EUR][1000 genomes]
rs12082997	1.00[EUR][1000 genomes]
rs12085205	1.00[EUR][1000 genomes]
rs12096208	1.00[EUR][1000 genomes]
rs12098060	1.00[EUR][1000 genomes]
rs12098103	1.00[EUR][1000 genomes]
rs12239554	1.00[EUR][1000 genomes]
rs13374130	1.00[EUR][1000 genomes]
rs1528207	1.00[EUR][1000 genomes]
rs1609258	1.00[EUR][1000 genomes]
rs17127638	1.00[EUR][1000 genomes]
rs17127642	1.00[EUR][1000 genomes]
rs17127659	1.00[EUR][1000 genomes]
rs28469637	1.00[EUR][1000 genomes]
rs28630865	1.00[EUR][1000 genomes]
rs55687112	1.00[EUR][1000 genomes]
rs56086106	1.00[EUR][1000 genomes]
rs56219021	1.00[EUR][1000 genomes]
rs56914812	1.00[EUR][1000 genomes]
rs57781890	1.00[EUR][1000 genomes]
rs58011743	1.00[EUR][1000 genomes]
rs58942206	1.00[EUR][1000 genomes]
rs58952834	1.00[EUR][1000 genomes]
rs58982700	1.00[EUR][1000 genomes]
rs59799567	1.00[EUR][1000 genomes]
rs61543247	1.00[EUR][1000 genomes]
rs61595551	1.00[EUR][1000 genomes]
rs61699583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6697449	1.00[EUR][1000 genomes]
rs72993115	1.00[EUR][1000 genomes]
rs72993118	1.00[EUR][1000 genomes]
rs72993177	1.00[EUR][1000 genomes]
rs72993190	1.00[EUR][1000 genomes]
rs72993201	1.00[EUR][1000 genomes]
rs72993202	1.00[EUR][1000 genomes]
rs72995206	1.00[EUR][1000 genomes]
rs72995208	1.00[EUR][1000 genomes]
rs72995209	1.00[EUR][1000 genomes]
rs72995238	1.00[EUR][1000 genomes]
rs74108610	1.00[EUR][1000 genomes]
rs74110906	1.00[EUR][1000 genomes]
rs74110911	1.00[EUR][1000 genomes]
rs74110912	1.00[EUR][1000 genomes]
rs74110913	1.00[EUR][1000 genomes]
rs74111525	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv931600	chr1:103548397-104161031	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv498007	chr1:103573857-104107589	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv432554	chr1:103673437-104128773	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103722000-103730800	Weak transcription	NH-A	brain
2	chr1:103722600-103731000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:103724800-103726200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:103725000-103725800	Enhancers	Adipose Nuclei	Adipose
5	chr1:103725000-103727000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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