Variant report

Variant	rs6697449
Chromosome Location	chr1:103718877-103718878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10437032	1.00[EUR][1000 genomes]
rs10493994	1.00[EUR][1000 genomes]
rs11164724	1.00[EUR][1000 genomes]
rs11164725	1.00[EUR][1000 genomes]
rs11164730	1.00[EUR][1000 genomes]
rs11164731	1.00[EUR][1000 genomes]
rs11164733	1.00[EUR][1000 genomes]
rs11164735	1.00[EUR][1000 genomes]
rs11164736	1.00[EUR][1000 genomes]
rs11164737	1.00[EUR][1000 genomes]
rs11164738	1.00[EUR][1000 genomes]
rs11164739	1.00[EUR][1000 genomes]
rs11164751	1.00[EUR][1000 genomes]
rs11164752	1.00[EUR][1000 genomes]
rs12058864	1.00[EUR][1000 genomes]
rs12059958	1.00[EUR][1000 genomes]
rs12060328	1.00[EUR][1000 genomes]
rs12060714	1.00[EUR][1000 genomes]
rs12061112	1.00[EUR][1000 genomes]
rs12061317	1.00[EUR][1000 genomes]
rs12062539	1.00[EUR][1000 genomes]
rs12062593	1.00[EUR][1000 genomes]
rs12068683	1.00[EUR][1000 genomes]
rs12072826	1.00[EUR][1000 genomes]
rs12072971	1.00[EUR][1000 genomes]
rs12074606	1.00[EUR][1000 genomes]
rs12077747	1.00[EUR][1000 genomes]
rs12078453	1.00[EUR][1000 genomes]
rs12082997	1.00[EUR][1000 genomes]
rs12085205	1.00[EUR][1000 genomes]
rs12096208	1.00[EUR][1000 genomes]
rs12098060	1.00[EUR][1000 genomes]
rs12098103	1.00[EUR][1000 genomes]
rs12239554	1.00[EUR][1000 genomes]
rs13374130	1.00[EUR][1000 genomes]
rs1528207	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1609258	1.00[EUR][1000 genomes]
rs17127638	1.00[EUR][1000 genomes]
rs17127642	1.00[EUR][1000 genomes]
rs17127659	1.00[EUR][1000 genomes]
rs17127667	1.00[EUR][1000 genomes]
rs28469637	1.00[EUR][1000 genomes]
rs28630865	1.00[EUR][1000 genomes]
rs55687112	1.00[EUR][1000 genomes]
rs56086106	1.00[EUR][1000 genomes]
rs56219021	1.00[EUR][1000 genomes]
rs56914812	1.00[EUR][1000 genomes]
rs57781890	1.00[EUR][1000 genomes]
rs58011743	1.00[EUR][1000 genomes]
rs58942206	1.00[EUR][1000 genomes]
rs58952834	1.00[EUR][1000 genomes]
rs58982700	1.00[EUR][1000 genomes]
rs59799567	1.00[EUR][1000 genomes]
rs61543247	1.00[EUR][1000 genomes]
rs61595551	1.00[EUR][1000 genomes]
rs61699583	1.00[EUR][1000 genomes]
rs72993115	1.00[EUR][1000 genomes]
rs72993118	1.00[EUR][1000 genomes]
rs72993177	1.00[EUR][1000 genomes]
rs72993190	1.00[EUR][1000 genomes]
rs72993201	1.00[EUR][1000 genomes]
rs72993202	1.00[EUR][1000 genomes]
rs72995206	1.00[EUR][1000 genomes]
rs72995208	1.00[EUR][1000 genomes]
rs72995209	1.00[EUR][1000 genomes]
rs72995238	1.00[EUR][1000 genomes]
rs74108610	1.00[EUR][1000 genomes]
rs74110906	1.00[EUR][1000 genomes]
rs74110911	1.00[EUR][1000 genomes]
rs74110912	1.00[EUR][1000 genomes]
rs74110913	1.00[EUR][1000 genomes]
rs74111525	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv931600	chr1:103548397-104161031	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv498007	chr1:103573857-104107589	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv432554	chr1:103673437-104128773	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103716400-103719800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:103716400-103720000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:103716400-103721600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:103716400-103721800	Weak transcription	HSMMtube	muscle
5	chr1:103716600-103719800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:103716800-103721800	Weak transcription	NH-A	brain
7	chr1:103718000-103719000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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