Variant report

Variant	rs171283
Chromosome Location	chr11:64240392-64240393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000269038	Chromatin interaction
ENSG00000110076	Chromatin interaction
ENSG00000168071	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000269290	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs240688	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs240689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs240690	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs240697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs519106	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64239800-64244200	Enhancers	Brain Germinal Matrix	brain
2	chr11:64240000-64241000	Enhancers	Pancreas	Pancrea
3	chr11:64240000-64241200	Flanking Active TSS	K562	blood
4	chr11:64240000-64242400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:64240000-64243200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:64240200-64246400	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links