Variant report
| Variant | rs240689 |
|---|---|
| Chromosome Location | chr11:64237950-64237951 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 11:64233404-64254719..11:64489786-64499245 | Hela-S3 | cervix: | |
| 2 | 11:64233404-64254719..11:64626490-64631647 | Hela-S3 | cervix: | |
| 3 | 11:64233404-64254719..11:64544826-64559210 | Hela-S3 | cervix: | |
| 4 | 11:64233404-64254719..11:64415880-64426617 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168066 | Chromatin interaction |
| ENSG00000269038 | Chromatin interaction |
| ENSG00000110076 | Chromatin interaction |
| ENSG00000110047 | Chromatin interaction |
| ENSG00000269290 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs171283 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs240688 | 1.00[AFR][1000 genomes] |
| rs240690 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs240697 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs519106 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832187 | chr11:64121969-64312300 | Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 2 | nsv555194 | chr11:64189110-64238023 | Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv1035485 | chr11:64228847-64354869 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
