Variant report
| Variant | rs17128332 |
|---|---|
| Chromosome Location | chr14:55715296-55715297 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:55710760..55712909-chr14:55714004..55716438,2 | K562 | blood: | |
| 2 | chr14:55568573..55570268-chr14:55714995..55717036,2 | K562 | blood: | |
| 3 | chr14:55709259..55712260-chr14:55714004..55717778,3 | K562 | blood: | |
| 4 | chr14:55714468..55716489-chr14:55876982..55879150,2 | MCF-7 | breast: | |
| 5 | chr14:55712626..55715318-chr14:55876588..55879514,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000126775 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs17128330 | 0.90[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17128336 | 0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17128338 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57787897 | 1.00[EUR][1000 genomes] |
| rs60824910 | 1.00[EUR][1000 genomes] |
| rs61593470 | 1.00[EUR][1000 genomes] |
| rs61709162 | 1.00[EUR][1000 genomes] |
| rs7140848 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73275722 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8010658 | 0.81[LWK][hapmap];0.97[MKK][hapmap] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
