Variant report

Variant	rs57787897
Chromosome Location	chr14:55756040-55756041
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55747841..55751316-chr14:55753172..55757171,4	K562	blood:
2	chr14:55738930..55742893-chr14:55754578..55757898,4	K562	blood:
3	chr14:55755867..55758253-chr14:55758745..55760531,2	MCF-7	breast:
4	chr14:55746731..55750149-chr14:55754449..55758137,4	K562	blood:
5	chr14:55738930..55742893-chr14:55754578..55758061,4	K562	blood:
6	chr14:55737955..55739932-chr14:55755317..55756885,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction
ENSG00000239686	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17128330	1.00[EUR][1000 genomes]
rs17128332	1.00[EUR][1000 genomes]
rs17128336	1.00[EUR][1000 genomes]
rs17128338	1.00[EUR][1000 genomes]
rs57268532	1.00[AMR][1000 genomes]
rs60824910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61593470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61709162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7140848	1.00[EUR][1000 genomes]
rs73275722	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55739200-55768400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr14:55740000-55770600	Weak transcription	Colonic Mucosa	Colon
3	chr14:55741000-55764600	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:55741000-55773200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:55741800-55763800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:55741800-55763800	Weak transcription	NHEK	skin
7	chr14:55741800-55764600	Weak transcription	HMEC	breast
8	chr14:55742000-55765400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:55744000-55767800	Weak transcription	K562	blood
10	chr14:55744800-55757800	Weak transcription	Fetal Intestine Large	intestine
11	chr14:55744800-55764800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr14:55744800-55765400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:55744800-55767800	Weak transcription	Pancreas	Pancrea
14	chr14:55745000-55761000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr14:55745000-55764000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr14:55745000-55768400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr14:55745000-55774000	Weak transcription	Liver	Liver
18	chr14:55745200-55761000	Weak transcription	Thymus	Thymus
19	chr14:55745200-55764000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr14:55745200-55778400	Weak transcription	Fetal Thymus	thymus
21	chr14:55745400-55758400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr14:55745400-55759400	Weak transcription	Dnd41	blood
23	chr14:55745400-55764000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr14:55745600-55761000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr14:55745600-55764200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:55745600-55764200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr14:55745600-55764400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr14:55745600-55769200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr14:55745800-55765400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr14:55745800-55765400	Weak transcription	Fetal Stomach	stomach
31	chr14:55746800-55764000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr14:55747200-55760400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr14:55747400-55768400	Weak transcription	NHLF	lung
34	chr14:55748000-55759200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:55748000-55770000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr14:55748400-55759200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr14:55749200-55756800	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr14:55749400-55760800	Weak transcription	GM12878-XiMat	blood
39	chr14:55749400-55769800	Weak transcription	Primary B cells from cord blood	blood
40	chr14:55751600-55761400	Weak transcription	Small Intestine	intestine
41	chr14:55751600-55765200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr14:55752000-55765200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr14:55752000-55765400	Weak transcription	Fetal Intestine Small	intestine
44	chr14:55752200-55758400	Weak transcription	Right Atrium	heart
45	chr14:55752200-55760000	Weak transcription	Esophagus	oesophagus
46	chr14:55752200-55760600	Weak transcription	Ovary	ovary
47	chr14:55752200-55764400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr14:55752200-55765200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr14:55752200-55765200	Weak transcription	Lung	lung
50	chr14:55752400-55763200	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links