Variant report

Variant	rs17129055
Chromosome Location	chr1:86792380-86792381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10489735	0.87[ASN][1000 genomes]
rs11161820	0.81[AMR][1000 genomes]
rs11808143	0.85[ASN][1000 genomes]
rs12564227	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12741520	0.87[ASN][1000 genomes]
rs12755828	0.87[ASN][1000 genomes]
rs1323027	0.87[ASN][1000 genomes]
rs1323029	0.87[ASN][1000 genomes]
rs1323030	0.87[ASN][1000 genomes]
rs1323031	0.87[ASN][1000 genomes]
rs1323034	0.87[ASN][1000 genomes]
rs1334140	0.89[ASN][1000 genomes]
rs1334150	0.81[AMR][1000 genomes]
rs1575413	0.87[ASN][1000 genomes]
rs1575414	0.87[ASN][1000 genomes]
rs1575415	0.87[ASN][1000 genomes]
rs17129078	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2181419	0.87[ASN][1000 genomes]
rs2250857	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2390100	0.87[ASN][1000 genomes]
rs34747640	0.87[ASN][1000 genomes]
rs3765978	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs410807	0.87[ASN][1000 genomes]
rs4292929	0.85[AMR][1000 genomes]
rs450927	0.87[ASN][1000 genomes]
rs452865	0.87[ASN][1000 genomes]
rs567133	0.89[ASN][1000 genomes]
rs569912	0.87[ASN][1000 genomes]
rs61800656	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61804060	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6660770	0.87[ASN][1000 genomes]
rs6673014	0.85[ASN][1000 genomes]
rs6685789	0.87[ASN][1000 genomes]
rs6689064	0.87[ASN][1000 genomes]
rs6692784	0.87[ASN][1000 genomes]
rs6701074	0.87[ASN][1000 genomes]
rs6704104	0.87[ASN][1000 genomes]
rs7527383	0.87[ASN][1000 genomes]
rs7527390	0.87[ASN][1000 genomes]
rs7533682	0.86[ASN][1000 genomes]
rs7536173	0.87[ASN][1000 genomes]
rs7542133	0.87[ASN][1000 genomes]
rs7548881	0.87[ASN][1000 genomes]
rs768610	0.87[ASN][1000 genomes]
rs9433030	0.81[AMR][1000 genomes]
rs9787365	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs990771	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1002541	chr1:86689088-86905902	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871866	chr1:86726619-86851420	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86790400-86793000	Weak transcription	Fetal Lung	lung
2	chr1:86791400-86804600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:86791600-86792600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr1:86792200-86792600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:86792200-86792800	Enhancers	Primary neutrophils fromperipheralblood	blood

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