Variant report

Variant	rs569912
Chromosome Location	chr1:86800679-86800680
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10489735	1.00[ASN][1000 genomes]
rs10493789	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs10747328	0.91[CEU][hapmap];0.89[CHB][hapmap]
rs10873777	0.95[CEU][hapmap];0.89[CHB][hapmap]
rs10873782	0.83[CEU][hapmap]
rs1158505	0.91[CEU][hapmap];0.90[CHB][hapmap]
rs11808143	0.98[ASN][1000 genomes]
rs1182102	0.95[CEU][hapmap]
rs12741520	0.99[ASN][1000 genomes]
rs12755828	1.00[ASN][1000 genomes]
rs1323027	0.99[ASN][1000 genomes]
rs1323029	0.99[ASN][1000 genomes]
rs1323030	0.99[ASN][1000 genomes]
rs1323031	0.99[ASN][1000 genomes]
rs1323033	0.89[EUR][1000 genomes]
rs1323034	1.00[ASN][1000 genomes]
rs1334140	0.98[ASN][1000 genomes]
rs1334143	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs1334145	0.88[CEU][hapmap]
rs1334148	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs1575413	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1575414	0.99[ASN][1000 genomes]
rs1575415	1.00[ASN][1000 genomes]
rs17129055	0.87[ASN][1000 genomes]
rs175363	0.95[CEU][hapmap];0.84[CHB][hapmap]
rs185655	0.85[CHB][hapmap]
rs1931363	0.86[CEU][hapmap];0.89[CHB][hapmap]
rs2181419	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2208925	0.81[ASN][1000 genomes]
rs2390100	0.99[ASN][1000 genomes]
rs272491	0.84[CEU][hapmap];0.90[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs272492	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs272498	0.95[CEU][hapmap];0.88[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs272504	0.95[CEU][hapmap];0.89[CHB][hapmap]
rs272507	0.95[CEU][hapmap];0.89[CHB][hapmap]
rs272516	0.95[CEU][hapmap];0.84[CHB][hapmap];0.82[EUR][1000 genomes]
rs34747640	1.00[ASN][1000 genomes]
rs3765975	0.91[CEU][hapmap];0.89[CHB][hapmap]
rs405424	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs410807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs450927	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs452865	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567133	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61800656	0.87[ASN][1000 genomes]
rs6660770	0.99[ASN][1000 genomes]
rs6673014	0.97[ASN][1000 genomes]
rs6685789	0.99[ASN][1000 genomes]
rs6689064	0.99[ASN][1000 genomes]
rs6692784	1.00[ASN][1000 genomes]
rs6695671	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs6701074	0.99[ASN][1000 genomes]
rs6704104	0.99[ASN][1000 genomes]
rs7525626	0.87[EUR][1000 genomes]
rs7527383	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7527390	1.00[ASN][1000 genomes]
rs7533682	0.98[ASN][1000 genomes]
rs7536173	0.99[ASN][1000 genomes]
rs7542133	1.00[ASN][1000 genomes]
rs7548881	1.00[ASN][1000 genomes]
rs768610	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9787365	0.87[ASN][1000 genomes]
rs990771	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997641	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1002541	chr1:86689088-86905902	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871866	chr1:86726619-86851420	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86791400-86804600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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