Variant report

Variant	rs17129171
Chromosome Location	chr1:67074825-67074826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17129156	1.00[AFR][1000 genomes]
rs17129205	0.84[AFR][1000 genomes]
rs17129217	0.90[AFR][1000 genomes]
rs17129225	0.85[AFR][1000 genomes]
rs17129246	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1221	chr1:67047908-67092696	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67058000-67092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:67065600-67077000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:67065800-67078800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:67065800-67082800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:67066200-67083800	Weak transcription	NHLF	lung
6	chr1:67066400-67089600	Weak transcription	Brain Angular Gyrus	brain
7	chr1:67066600-67077800	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:67068000-67082600	Weak transcription	NHDF-Ad	bronchial
9	chr1:67071200-67075400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:67071600-67094800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:67072000-67075200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:67073200-67079000	Weak transcription	Aorta	Aorta
13	chr1:67073600-67075400	Enhancers	Fetal Heart	heart
14	chr1:67073600-67075800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:67074000-67081200	Weak transcription	Brain Anterior Caudate	brain
16	chr1:67074400-67075200	Enhancers	Fetal Lung	lung
17	chr1:67074600-67078000	Weak transcription	Brain Substantia Nigra	brain
18	chr1:67074800-67075000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:67074800-67075400	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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