Variant report

Variant	rs17129205
Chromosome Location	chr1:67089278-67089279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17129098	0.94[AFR][1000 genomes]
rs17129156	0.84[AFR][1000 genomes]
rs17129171	0.84[AFR][1000 genomes]
rs17129183	0.89[AFR][1000 genomes]
rs17129217	0.84[AFR][1000 genomes]
rs2066006	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1221	chr1:67047908-67092696	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67058000-67092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:67066400-67089600	Weak transcription	Brain Angular Gyrus	brain
3	chr1:67071600-67094800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:67082000-67089400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:67084200-67099800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:67084600-67089400	Weak transcription	NHLF	lung
7	chr1:67085600-67089400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:67086400-67089600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:67086600-67089400	Weak transcription	Brain Substantia Nigra	brain
10	chr1:67087600-67090400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:67088400-67091000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:67088400-67114200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:67088800-67091200	Enhancers	NHDF-Ad	bronchial
14	chr1:67089000-67089600	Enhancers	Aorta	Aorta
15	chr1:67089000-67090000	Enhancers	HUVEC	blood vessel
16	chr1:67089200-67089600	Enhancers	NH-A	brain
17	chr1:67089200-67091200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr1:67089200-67091200	Enhancers	Osteobl	bone
19	chr1:67089200-67091600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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